- [Resource Hub](/)
- [Resource](/?resource-type=poster#library)
- Orion™: 16-plex single-step stain and imaging of oral squamous cell carcinoma

# Orion™: 16-plex single-step stain and imaging of oral squamous cell carcinoma

Highly multiplexed tissue imaging usually builds its picture over repeated rounds of staining and imaging; this SITC 2023 poster shows a whole FFPE section of oral squamous cell carcinoma stained with a 16-plex panel in one round and imaged on Orion in a single scan.

Presented by RareCyte.

Read or download to see:

- One staining round, one imaging round, on a standard FFPE section. The section was stained in one round with a 16-plex immunofluorescence panel, using ArgoFluor-conjugated antibodies and standard IF protocols, imaged whole-slide at 20X on the Orion instrument in a single scan with tissue autofluorescence isolated as an additional channel, and written out as OME-TIFF; the protocol then de-coverslips and H&E-stains the same section.

- A single scan separates normal tongue mucosa, invasive tumor and the stroma between them. E-Cadherin identifies the basal epithelial layer and most tumor cells while Pan-CK marks squamous differentiation; Ki67 shows the tumor to be far more proliferative than the normal epithelium; and CD31 capillary endothelium, SMA and MYH11 in arteriolar walls, FAP in fibroblasts, and Vimentin across many stromal cell types resolve the submucosal stroma.

- The immune response is read cell by cell at the tumor border. CD20 B cells, CD4 helper T cells and CD8a cytotoxic T cells gather within an active area of cellular fibrosis marked by FAP at the edge of the tumor nodule; in a T cell aggregate beside nests of tumor cells, FOXP3 identifies regulatory T cells and the checkpoint marker PD-1 marks activated cells, including lone CD8 T cells that strongly express PD-1 within the tumor nests.

[Download poster](https://cdn.sanity.io/files/s3p6uqps/production/6be2ae5a987208dfe87a20a87e46a5794938aecd.pdf)

Your browser doesn&rsquo;t support embedded PDFs.
[Download the poster](https://cdn.sanity.io/files/s3p6uqps/production/6be2ae5a987208dfe87a20a87e46a5794938aecd.pdf) to view it.

[Back to all resources](/#library)
## Related resources
[Article](https://www.selectscience.net/article/advanced-spatial-biology-sheds-new-light-on-therapeutic-research) Orion SelectScience
### Advanced spatial biology sheds new light on therapeutic research
[Read Article](https://www.selectscience.net/article/advanced-spatial-biology-sheds-new-light-on-therapeutic-research) [Article](https://www.selectscience.net/editorial-articles/bringing-spatial-biology-to-the-clinic-a-new-lens-on-cancer-biology/?&artID=58147) Orion SelectScience
### Bringing spatial biology to the clinic: “A new lens on cancer biology”
[Read Article](https://www.selectscience.net/editorial-articles/bringing-spatial-biology-to-the-clinic-a-new-lens-on-cancer-biology/?&artID=58147) [Article](https://www.selectscience.net/article/how-to-unlock-the-complexity-of-tumor-microenvironments) Orion SelectScience
### How to unlock the complexity of tumor microenvironments
[Read Article](https://www.selectscience.net/article/how-to-unlock-the-complexity-of-tumor-microenvironments) [Brochure](https://go.pardot.com/l/455452/2020-07-15/8p7453/455452/1606951069teslfZQe/BR21_101_Orion_Brochure_201202.pdf) Orion
### Orion Spatial Proteomics Platform
[View Brochure](https://go.pardot.com/l/455452/2020-07-15/8p7453/455452/1606951069teslfZQe/BR21_101_Orion_Brochure_201202.pdf) [Spec Sheet](https://pardot.rarecyte.com/l/455452/2026-02-24/965v3w/455452/1771949067AeuR6syb/Orion_HT_spec_sheet.pdf) Orion
### Orion HT
[View Spec Sheet](https://pardot.rarecyte.com/l/455452/2026-02-24/965v3w/455452/1771949067AeuR6syb/Orion_HT_spec_sheet.pdf) [Spec Sheet](https://pardot.rarecyte.com/l/455452/2025-10-31/961nyb/455452/1761933957WEJWJyeN/2025.07.14___SS___Orion__LE_.pdf) Orion
### Orion LE
[View Spec Sheet](https://pardot.rarecyte.com/l/455452/2025-10-31/961nyb/455452/1761933957WEJWJyeN/2025.07.14___SS___Orion__LE_.pdf) [Spec Sheet](https://go.pardot.com/l/455452/2020-07-15/8p742r/455452/1607104572nfrlJouR/DF_24_101_201203_Orion_Datafile.pdf) Orion
### Orion
[View Spec Sheet](https://go.pardot.com/l/455452/2020-07-15/8p742r/455452/1607104572nfrlJouR/DF_24_101_201203_Orion_Datafile.pdf) [Research Spotlight](/resources/spatial-profiling-immune-correlates-mss-crc/) Orion 2026
### Spatial Profiling Uncovers Immune Correlates of Durable Response in Phase 1/2 MSS Colorectal Cancer Trial
[Read Spotlight](/resources/spatial-profiling-immune-correlates-mss-crc/) [Publication](/resources/copanlisib-nivolumab-microsatellite-stable-colorectal/) Orion Nature Communications 2026
### Copanlisib in combination with nivolumab for microsatellite stable colorectal cancer: a phase 1/2 trial
[Read More](/resources/copanlisib-nivolumab-microsatellite-stable-colorectal/) [Publication](https://doi.org/10.1158/2159-8290.CD-26-0171) Orion Cancer Discovery 2026
### Spatial Integration of Protein and Chromosomal States Reveals Early Copy-Number Changes and Genotype-Associated Immune Neighborhoods in Serous Ovarian Cancer Evolution
[View Publication](https://doi.org/10.1158/2159-8290.CD-26-0171) [Publication](https://www.nature.com/articles/s41467-026-74933-w) Orion Nature Communications 2026
### Multiple human transgenes prolong survival of triple-carbohydrate knockout porcine kidney xenografts in nonhuman primates
[View Publication](https://www.nature.com/articles/s41467-026-74933-w) [Video](https://www.youtube.com/watch?v=KOiToZIGN0g) Orion 2026
### Dr. Tanjina Kader on mapping spatial proteomics and chromosomal changes on the same tissue section
[Watch Video](https://www.youtube.com/watch?v=KOiToZIGN0g)
